Wednesday, October 21, 2009

The ODP in Nature

I finally managed to publish in Nature (along with Mike Taylor and Matt Wedel)! Ok, it's only a glorified letter to the editor. But we still won't complain. Our contribution [subscription required; I know, it's ironic] focuses on the issue of data sharing in paleontology. It's partly a plea for greater data availability, and partly an advertisement for the Open Dinosaur Project. For more details, see my post at the ODP project blog.

Citation
Farke, A. A., M. P. Taylor, and M. J. Wedel. 2009. Public databases offer one solution to mistrust and secrecy. Nature 461: 1053. [link; subscription required]

Tuesday, October 20, 2009

Open Access Recap

Continuing with our Open Access Week theme, I wanted to highlight some previous posts on the issue here at the Open Source Paleontologist. In other words, I don't have time to write a more comprehensive post right now. So, enjoy these old ones!

Greatest Hits of Open Access at OSP
Open Access Publishing and the Paleontologist
Open Access Journals in Paleontology
Rating Open Access Journals in Paleo - Intro, I, II, III, IV
My Dissertation - Now Open Access
Aetosaurs and the Open Access Dissertation

Monday, October 19, 2009

It's Open Access Week!

October 19 - October 23 is designated Open Access Week, in order to raise awareness of open access publication and scholarship. So, I'll be blogging a little bit more about open access during the next few days.

For my first post, I wanted to clarify a common confusion that I hear from many colleagues: open source vs. open access. Although the terms are related in some ways (indeed, they derive from a very similar philosophy), they refer to two discrete concepts.

Open Access: Focuses on the unrestricted sharing of research results, typically through open access journals (PLoS ONE, Palaeontologia Electronica, etc.).

Open Source: Computer software, typically (but not always) freely distributed, in which the source code is freely available. There are a host of other stipulations in some definitions, which are largely an elaboration upon this point.

Thus, PLoS ONE is open access; 3D Slicer is open source.

Thursday, October 15, 2009

More on JVP's Big Switch

Astute paleontologists are likely aware by now of major changes ahead for the Society of Vertebrate Paleontology's Journal of Vertebrate Paleontology, announced in July and detailed in this blog post. The journal has grown at a tremendous rate, and something needed to be done in order to ensure continued high quality, timely publication, and financial viability into the foreseeable future. After extensive research, the decision was made to partner with commercial publisher Taylor & Francis.

Of course, many questions remained for those of us who follow issues of academic publishing and access to publications. What would happen to copyright of articles? Who gets the profits from sales of the journal? Would authors still be able to post a PDF on their website? So, I drafted an email and sent it along to the relevant folks in SVP's leadership.

I am now happy to say that an extensive list of FAQs, responding to questions from me and other folks, is now posted at SVP's website [link to PDF]. Every single one of my questions (and others) was addressed, in detail. My sincere thanks goes to the individuals at SVP who put this together! Major points (and some commentary) follow:

Copyright
Copyright will stay with the Society of Vertebrate Paleontology (as appropriate - publications produced by many government workers should be exempted), as has been the case in the past. This is a Good Thing.

Is This Forever?
The contract lasts five years - so, SVP has the option to find another publisher or renegotiate at the end of this period. Again, a Good Thing. This also means, however, that those society members with an interest in commenting on or influencing the renewal process have about three (or at most four) years to wait before springing to action. Mark your calendars for SVP 2012 and 2013. Given the rapid pace at which academic publishing is changing right now, it will certainly be worth taking a close look at the conditions of journal publication in a few years.

Author Benefits
In the new publishing arrangement, authors will benefit from faster publication (by going from four issues a year to six). This is, of course, a major plus. Other benefits are, in my opinion, slightly more mixed. Gone are the days when we can (legally) pay an affordable fee for the right to post the PDF of our published work to a personal web page. We will, however, receive a PDF that can be emailed to colleagues and those who request it. This unfortunately represents a step backwards for the (legal) distribution of paleontological information. As a consolation prize, though, we get 50 free paper reprints of our articles! [editorial note: I had a rant written on this topic, but decided against including it here in the end. Suffice it to say that I personally find paper reprints less than useful in this day and age, recognizing that others may not share this opinion]

Open Access
It is probably no surprise that JVP will not be going to an open access model, even a delayed open access model. On a small positive note, authors now have the option of purchasing complete open access for their article (presently, to the tune of $3,250) through Taylor & Francis's iOpenAccess program.

Final Thoughts
It's still far too early to know for sure how JVP's transition to Taylor & Francis will work out. As mentioned above, the world of academic publishing is changing. Only time will tell if the switch is a Totally Good Thing or not.

Saturday, October 10, 2009

The Paleo Paper Challenge: Roll Call!

The Paleo Paper Challenge, sponsored by Dave Hone of Dave Hone's Archosaur Musings and me, is nearly a month in. At last count, we have 22 23 participants! That's a lot of science going on.

Of course, what's the point of having a challenge without being challenged just a little bit? The whole point of this is to nudge. . .cajole. . .motivate. . .humiliate. . .all of us into finishing up those nagging papers. With less than three months to go, it's time to start kicking things into overdrive.

PPCers: Now it's time to make good on your promises. In the comments below, drop a note to tell us how you're doing! It's upon all of us to make each other finish these papers!

I'll start. I've committed to finishing a paper on a Myledaphus tooth site, as well as finish up revisions on one of my dissertation chapters. Right now, I'm ashamed to say that I haven't done a thing. But, the good news is that the dissertation chapter is on my priority list for the coming week. Readers: if I don't indicate any progress by Friday, you are allowed. . .nay, required. . .to publicly humiliate me. And while you're at it, get to work on your own papers!

That is all.

Sunday, October 4, 2009

The Paleo Paper Challenge in the Blogosphere

The Paleo Paper Challenge is now in full swing! At just under 20 participants (and please let me know if I've inadvertently left you off the list!), some serious science is going to be happening in the next few months. Dave and I are seriously excited about the turnout.

In my casual internet browsing, I've noticed that a few of you have blogged about your efforts on the PPC (or at least mentioned them in passing). Here's a quick run-down of some of the links - once again, please let me know if I've left anyone out! And if you're a blogger, but haven't blogged about your participation, why not give it a try now?

Dave Hone's Archosaur Musings (Dave Hone; only most recent post included here): Return of the PPC, post SVP (& SVPC), OK?
Dinochick Blogs (ReBecca Hunt): Only 88 Days Left
El Pakozoico (Pak): Paleo Paper Challenge!
SV-POW! (Mike Taylor): Electronic Publishing is Inevitable, and Even the ICZN is Beginning to Accept It
Thoughts and Ideas from a Paleo Punker (Tor Bertin): The Paper Paper Challenge

Friday, October 2, 2009

The Paleo Paper Challenge: Post-SVP

In the event that you were trapped under a building for the past two weeks, the annual Society of Vertebrate Paleontology meetings have come and gone. Not only do these meetings provide a nice outlet for ongoing research, they also provided an opportunity for me and Dave to 1) recruit more participants for the Paleo Paper Challenge; and 2) nag everyone to get to work on their papers, already! With the SVP recruits and new volunteers from the comment threads of this blog, the Paleo Paper Challenge is rounding out nicely. Oh yeah, and I finally got to meet Dave Hone in person.

Acceptors of the Paleo Paper Challenge
Brian Beatty
Calvert Formation terrestrial mammals review with Ralph Eshelman

Tor Bertin:

Statistical analysis of evolution of sauropod body size, involving a mystery specimen
Spinosauridae review

Lisa Buckley

Papers to be decided

Andrea Cau:
Description of metriorhynchid from northern Italy

Andy Farke:
Myledaphus paper
Final dissertation chapter

John Foster:
Morrison critter paper

Francisco Gasco:
Master's thesis

Mike Habib:
Pterosaur flight range

Penny Higgins:
Bulk isotopic ratios from tooth enamel and general interpretation of environment

Casey Holliday:
Articular cartilage paper

Thomas Holtz:
Tyrannosaur heterochrony/paleoecology

Dave Hone:
Unspecified paper

ReBecca Hunt:
Mygatt-Moore taphonomy paper

Nick Gardner:
Unspecified paper with Mickey Mortimer

Chris Note and Ari Grossman:
Dinosaur ecomorphology

Bill Parker:
Revueltosaurus manuscript

Heinrich Mallison:
sauropods rearing
sauropodomorph rapid locomotion

Anthony Maltese:
Unspecified paper

Mark Mancini:
Redondosaurus cranial description (with Axel Hungerbuehler)

Eric Snively:
Chicken electromyography and implications for big theropod neck muscles
Atlas of gekkotan lizards of the Paris Basin
Artiodactyl vs. Stegoceras head-strike mechanics

Mike Taylor:
The Archbishop description

Matt Wedel:
Final dissertation chapter

Adam Yates:
Early sauropodomorph pneumaticity
Rauisuchians of the Elliot Formation